Geometry of the Kimura 3-parameter model

DOI10.1016/j.aam.2007.09.003zbMath1222.14110arXivmath/0702834WikidataQ61068404 ScholiaQ61068404MaRDI QIDQ950405

Marta Casanellas, Jesús Fernández-Sánchez

Publication date: 22 October 2008

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/math/0702834

zbMATH Keywords

algebraic statistics; local complete intersection; phylogenetic invariants; Kimura evolutionary model

Mathematics Subject Classification ID

92D15: Problems related to evolution

14M25: Toric varieties, Newton polyhedra, Okounkov bodies

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

14M10: Complete intersections

Related Items

Normality of the Kimura 3-Parameter Model, H-Representation of the Kimura-3 Polytope for the $m$-Claw Tree, Relevant phylogenetic invariants of evolutionary models, On the ideals of equivariant tree models, Embeddability of Kimura 3ST Markov matrices, Phylogenetic complexity of the Kimura 3-parameter model, Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry, Distance to the stochastic part of phylogenetic varieties, Equations defining probability tree models, Finiteness results for abelian tree models, Low degree equations for phylogenetic group-based models, Local equations for equivariant evolutionary models, Gorenstein property for phylogenetic trivalent trees

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