An improved model for whole genome phylogenetic analysis by Fourier transform

DOI10.1016/J.JTBI.2015.06.033MaRDI QIDQ739329zbMATH OpenOpenAlexWikidataFDO

Authors Changchuan Yin, Stephen Yau

Publication date 18 August 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2015.06.033

zbMATH Keywords

even scalingFourier transformgenomephylogenetic analysissimilarity distance

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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Cites work

• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence

Cited in

(6)

• Large-scale chromosome folding versus genomic DNA sequences: a discrete double Fourier transform technique
• Use of image texture analysis to find DNA sequence similarities
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• Whole-genome phylogeny of giant viruses by Fourier transform
• An estimator for local analysis of genome based on the minimal absent word
• Periodic power spectrum with applications in detection of latent periodicities in DNA sequences

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Uses Software

• REPETITA

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