Comparative Genomics

DOI10.1007/B105486MaRDI QIDQ5492791zbMATH OpenOpenAlexFDO

Authors Jeremy Buhler, Rachel K. Nordgren

Publication date 19 October 2006

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/b105486

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

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(9)

• Walking tree heuristics for comparative genomic alignments.
• Phylogenetic footprinting and consistent sets of local aligments
• Sequence similarity, motif detection and alignments with N-local decoded anchor points.
• Outlier detection in BLAST hits
• An Eulerian path approach to local multiple alignment for DNA sequences
• Efficient relaxed search in hierarchically clustered sequence datasets
• Comparative Genomics
• PhyBWT: alignment-free phylogeny via eBWT positional clustering
• An improved model for whole genome phylogenetic analysis by Fourier transform

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