Outlier detection in BLAST hits

DOI10.4230/LIPICS.WABI.2017.23MaRDI QIDQ5111831zbMATHFDO

Authors Nidhi Shah, Stephen F. Altschul, Mihai Pop

Publication date 27 May 2020

zbMATH Keywords

outlier detectionsequence alignmentmetagenomicstaxonomy classification

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Taxonomy, cladistics, statistics in mathematical biology (92B10) Computational methods for problems pertaining to biology (92-08)

Recommendations

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Cites work

• An invariant form for the prior probability in estimation problems
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
• Minimal Mutation Trees of Sequences

Cited in

(3)

• CONSULT-II: taxonomic identification using locality sensitive hashing
• Singling out ill-fit items in a classification. Application to the taxonomy of Enterobacteriaceae
• Detecting outlier samples in microarray data

Describes a project that uses

Uses Software

• pplacer
• V-Xtractor
• iTOL
• TIPP
• MEGAN

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