Outlier detection in BLAST hits

DOI10.4230/LIPICS.WABI.2017.23zbMATH Open1443.92046MaRDI QIDQ5111831FDOQ5111831

Authors: Nidhi Shah, Stephen F. Altschul, Mihai Pop 

Publication date: 27 May 2020

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zbMATH Keywords

outlier detectionsequence alignmentmetagenomicstaxonomy classification

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Taxonomy, cladistics, statistics in mathematical biology (92B10) Computational methods for problems pertaining to biology (92-08)

Cites Work

• An invariant form for the prior probability in estimation problems
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
• Minimal Mutation Trees of Sequences

Cited In (3)

• Detecting outlier samples in microarray data
• CONSULT-II: taxonomic identification using locality sensitive hashing
• Singling out ill-fit items in a classification. Application to the taxonomy of Enterobacteriaceae

Uses Software

• pplacer
• V-Xtractor
• iTOL
• TIPP
• MEGAN

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