Outlier detection in BLAST hits

DOI10.4230/LIPICS.WABI.2017.23zbMATH Open1443.92046MaRDI QIDQ5111831FDOQ5111831

Authors Nidhi Shah, Stephen F. Altschul, Mihai Pop 

Publication date 27 May 2020

zbMATH Keywords

outlier detectionsequence alignmentmetagenomicstaxonomy classification

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Taxonomy, cladistics, statistics in mathematical biology (92B10) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Singling out ill-fit items in a classification. Application to the taxonomy of Enterobacteriaceae
• Lightweight metagenomic classification via eBWT
• Predicting the metagenomics content with multiple CART trees
• Clustering Near-Identical Sequences for Fast Homology Search
• Comparative Genomics

Cites Work

• An invariant form for the prior probability in estimation problems
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
• Minimal Mutation Trees of Sequences

Cited In (3)

• Detecting outlier samples in microarray data
• CONSULT-II: taxonomic identification using locality sensitive hashing
• Singling out ill-fit items in a classification. Application to the taxonomy of Enterobacteriaceae

Uses Software

• pplacer
• V-Xtractor
• iTOL
• TIPP
• MEGAN

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