Use of image texture analysis to find DNA sequence similarities

DOI10.1016/J.JTBI.2018.07.001MaRDI QIDQ1714243zbMATH OpenOpenAlexWikidataFDO

Authors Weiyang Chen, Bo Liao, Weiwei Li

Publication date 31 January 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2018.07.001

zbMATH Keywords

entropyimage textureevolutionary relationshipsequences similarity

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Linear transformations, semilinear transformations (15A04)

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Cites work

• scientific article; zbMATH DE number 5627528 (Why is no real title available?)
• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• An improved binary representation of DNA sequences and its applications
• An improved model for whole genome phylogenetic analysis by Fourier transform
• Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition

Cited in

(6)

• A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding
• Bilateral similarity function: a novel and universal method for similarity analysis of biological sequences
• A signal processing method to explore similarity in protein flexibility
• DNA sequence reconstruction based on innovated hybridization technique of probabilistic cellular automata and particle swarm optimization
• Using simple statistics to compare genetic sequences
• Can power laws help us understand gene and proteome information?

Describes a project that uses

Uses Software

• CloudPhylo
• Clustal X
• T-coffee
• MUSCLE

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