Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition

DOI10.1111/j.0006-341X.2001.00441.xzbMath1209.62339WikidataQ45217325 ScholiaQ45217325MaRDI QIDQ3078753

Tiee-Jian Wu, Lung-An Li, Ya-Ching Hsieh

Publication date: 1 March 2011

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/j.0006-341x.2001.00441.x

zbMATH Keywords

Markov chain; DNA sequences; Mahalanobis distance; dissimilarity measures; Kullback-Leibler discrepancy; standardized Euclidean distance

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92C40: Biochemistry, molecular biology

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Uses Software

• FASTA

Cites Work

• Unnamed Item
• Estimating the dimension of a model
• The Distribution of the Frequency of Occurrence of Nucleotide Subsequences, Based on Their Overlap Capability
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• Hidden Markov chains and the analysis of genome structure
• A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words