Spectral distortion measures for biological sequence comparisons and database searching

DOI10.1016/j.patcog.2006.02.026zbMath1118.68147OpenAlexW2086683289MaRDI QIDQ854221

Tuan D. Pham

Publication date: 7 December 2006

Published in: Pattern Recognition (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.patcog.2006.02.026

zbMATH Keywords

bioinformaticsDNA sequencesprotein sequencesdistortion measures

Mathematics Subject Classification ID

Database theory (68P15) Pattern recognition, speech recognition (68T10)

Related Items

The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform ⋮ Weighted measures based on maximizing deviation for alignment-free sequence comparison ⋮ Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison ⋮ The reconstruction of an Hermitian Toeplitz matrix with prescribed eigenpairs ⋮ New method for comparing DNA primary sequences based on a discrimination measure

Uses Software

• PHYLIP
• ClustalW
• CLUSTAL

Cites Work

• Unnamed Item
• Wavelet Theory and Its Application to Pattern Recognition
• Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• The wavelet transform, time-frequency localization and signal analysis
• Hidden Markov Models for Speech Recognition
• Biological Sequence Analysis
• A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
• Statistical methods in bioinformatics: an introduction