Cited in
(70)- Global alignment of molecular sequences via ancestral state reconstruction
- A multiple sequence comparison method
- Data mining in bioinformatics
- Spectral distortion measures for biological sequence comparisons and database searching
- Bioinformatics and the Cell
- A survey of multiple sequence comparison methods
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- A non-local gap-penalty for profile alignment
- MAFFT
- Balibase
- CAP3
- FASTA
- ppALIGN
- JIGSAW
- ClustalW
- DIALIGN
- DIALIGN-TX
- QSCORE
- MUSCLE
- SLAM
- Wisconsin
- T-coffee
- Evigan
- MEGA6
- Bali-phy
- HMMoC
- Rose
- AVID
- AMADA
- AutoFACT
- DAMBE
- ESTAP
- GARSA
- GeneMark
- GOtcha
- INCLUSive
- Apollo
- Artemis
- CEGMA
- ECgene
- PCAP
- GeneSplicer
- GBrowse
- GRAIL
- PipMaker
- MAKER-P
- MAKER
- MetaVelvet
- MetaGeneAnnotator
- RepeatMasker
- PHRAP
- RePS
- TOUCAN
- TreeBASE
- PuFFIN
- modENCODE
- DGW
- MONKEY
- ThIEF
- MISHIMA
- Arbor3D
- RadCon
- TreeDT
- Warmr
- ADLD: a novel graphical representation of protein sequences and its application
- Adaptation of the method of musical composition for solving the multiple sequence alignment problem
- Computing posterior probabilities for score-based alignments using ppALIGN
- Comparative gene finding. Models, algorithms and implementation
- MSAID: multiple sequence alignment based on a measure of information discrepancy
- ThIEF: finding genome-wide trajectories of epigenetics marks
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