T-coffee
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(only showing first 100 items - show all)- A Lagrangian relaxation approach for the multiple sequence alignment problem
- \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae)
- Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem
- Rfam
- Use of image texture analysis to find DNA sequence similarities
- BioJava
- PHYLIP
- MEGA4
- PAUP*
- MAFFT
- Compositional properties of alignments
- Balibase
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- PhyloGibbs
- FASTA
- bioperl
- PAML
- EMBOSS
- ADLD: a novel graphical representation of protein sequences and its application
- GapsMis
- BlueSNP
- Biodoop
- MSAProbs
- 3DCoffee
- ProbCons
- DIALIGN
- ClustalW
- SeqWare
- Hadoop-BAM
- Eoulsan
- FX
- Seal
- CloudAligner
- A time warping approach to multiple sequence alignment
- Cofolga
- CLUSTAL
- DIALIGN-TX
- An adaptive and iterative algorithm for refining multiple sequence alignment
- MSAID: multiple sequence alignment based on a measure of information discrepancy
- Analyzing functional similarity of protein sequences with discrete wavelet transform
- QSCORE
- MUMMALS
- Wisconsin
- Repseek
- Varun
- LAGAN
- MUSCLE
- Kalign
- LTR_FINDER
- Adaptation of the method of musical composition for solving the multiple sequence alignment problem
- MTRAP
- A branch-and-cut algorithm for multiple sequence alignment
- Biostrings
- snoSeeker
- Matrices inducing generalized metric on sequences
- tracker2
- MEME
- FASTA3
- Cross-species network and transcript transfer
- Clustal X
- MEGA6
- Bali-phy
- ESyPred3D
- HHblits
- FUGUE
- PROMALS3D
- SABmark
- MUMMER
- FIMO
- Phylogenetic footprinting and consistent sets of local aligments
- DCA based algorithms for multiple sequence alignment (MSA)
- CONREAL
- modMine
- BIPS
- ORegAnno
- rVISTA
- InteroPORC
- UniPROBE
- Algorithms in computational molecular biology. Techniques approaches and applications.
- QNet
- Jnomics
- PatternHunter
- Noisy
- CloudPhylo
- PROMALS
- M-Coffee
- Jalview
- OXBench
- BLASTZ
- UCSC genome browser
- RSEARCH
- ExonHunter
- RNAKinetics
- AlexSys
- ReAligner
- iRMSD
- MergeAlign
- TCS
- Mauve
- Facet
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