ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks

DOI10.4230/LIPIcs.WABI.2017.19zbMath1443.92123OpenAlexW2752277477MaRDI QIDQ5111825

Stefano Lonardi, Weihua Pan, M.D. Abid Hasan, Evelien M. Bunnik, Karine le Roch, Anton Polishko

Publication date: 27 May 2020

Full work available at URL: https://doi.org/10.4230/lipics.wabi.2017.19

zbMATH Keywords

genomicsepigeneticsnucleosomeshistone markshistone tail modifications

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

ThIEF

Uses Software

• GLPK
• LIBSVM
• ClustalW
• CLUSTAL
• MUSCLE
• Clustal X
• Galaxy
• BEDTools
• PuFFIN
• modENCODE
• GitHub
• ChromHMM
• Bowtie 2
• DGW
• MONKEY

Cites Work

• On linear and semidefinite programming relaxations for hypergraph matching
• Improving the Hungarian assignment algorithm

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