ThIEF: finding genome-wide trajectories of epigenetics marks

DOI10.4230/LIPICS.WABI.2017.19zbMATH Open1443.92123OpenAlexW2752277477MaRDI QIDQ5111825FDOQ5111825

Stefano Lonardi, Weihua Pan, M.D. Abid Hasan, Evelien M. Bunnik, Karine le Roch, Anton Polishko

Publication date: 27 May 2020

Full work available at URL: https://doi.org/10.4230/lipics.wabi.2017.19

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zbMATH Keywords

genomicsepigeneticsnucleosomeshistone markshistone tail modifications

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Cites Work

• On linear and semidefinite programming relaxations for hypergraph matching
• Improving the Hungarian assignment algorithm

Cited In (1)

• ThIEF

Uses Software

• GLPK
• LIBSVM
• ClustalW
• CLUSTAL
• MUSCLE
• Clustal X
• Galaxy
• BEDTools
• PuFFIN
• modENCODE
• ChromHMM
• Bowtie 2
• DGW
• MONKEY
• GitHub

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