ThIEF: finding genome-wide trajectories of epigenetics marks

DOI10.4230/LIPICS.WABI.2017.19MaRDI QIDQ5111825zbMATH OpenOpenAlexFDO

Authors Anton Polishko, M.D. Abid Hasan, Weihua Pan, Evelien M. Bunnik, Karine le Roch, Stefano Lonardi

Publication date 27 May 2020

Full work available at URL https://doi.org/10.4230/lipics.wabi.2017.19

zbMATH Keywords

genomicsepigeneticsnucleosomeshistone markshistone tail modifications

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

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Cites work

• Improving the Hungarian assignment algorithm
• On linear and semidefinite programming relaxations for hypergraph matching

Cited in

(1)

• ThIEF

Describes a project that uses

Uses Software

• GitHub
• MONKEY
• DGW
• Bowtie 2
• ChromHMM
• modENCODE
• PuFFIN
• BEDTools
• Galaxy
• Clustal X
• MUSCLE
• CLUSTAL
• ClustalW
• LIBSVM
• GLPK

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