A non-homogeneous hidden-state model on first order differences for automatic detection of nucleosome positions

DOI10.2202/1544-6115.1454zbMATH Open1276.92061OpenAlexW2008748285WikidataQ37538792 ScholiaQ37538792MaRDI QIDQ2864086FDOQ2864086

Dana Huebert, Pei Fen Kuan, Sunduz Keles, Audrey Gasch

Publication date: 5 December 2013

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861327

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zbMATH Keywords

smoothingnucleosomesfirst order differencesnon-homogeneous hidden Markov modelMNase-chipMNase-Seq

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Cited In (3)

• Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling
• Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data
• NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC

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