Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling

DOI10.1515/sagmb-2014-0098zbMath1330.92048WikidataQ40222516 ScholiaQ40222516MaRDI QIDQ5962702

Rawane Samb, Khader Khadraoui, Arnaud Droit, Pascal Belleau, Astrid Deschênes, Lajmi Lakhal-Chaieb

Publication date: 16 February 2016

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2014-0098

zbMATH Keywords

Bayesian t-mixture; genome-wide profiling; multinomial-Dirichlet prior; nucleosome positioning; reversible-jump MCMC

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

92B15: General biostatistics

62F15: Bayesian inference

92C40: Biochemistry, molecular biology

Related Items

Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling

Uses Software

• VennDiagram
• consensusSeekeR
• nucleR
• PuFFIN
• nucleoSim
• PICS

Cites Work

• Unnamed Item
• Unnamed Item
• Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
• Estimating the dimension of a model
• Markov chains for exploring posterior distributions. (With discussion)
• A Non-Homogeneous Hidden-State Model on First Order Differences for Automatic Detection of Nucleosome Positions
• PICS: Probabilistic Inference for ChIP-seq
• A continuous-index Bayesian hidden Markov model for prediction of nucleosome positioning in genomic DNA
• Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling