Re-cracking the nucleosome positioning code

DOI10.2202/1544-6115.1367MaRDI QIDQ2863963zbMATH OpenOpenAlexWikidataFDO

Authors Mark R. Segal

Publication date 5 December 2013

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL http://www.escholarship.org/uc/item/0kk9r9pb

zbMATH Keywords

predictionperiodicityROC curvemotifsspectral envelope

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) General biology and biomathematics (92B05)

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Cited in

(6)

• The role of polarization interactions in the wrapping/unwrapping of nucleosomal DNA around the histone octamer: implications to gene regulation
• Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling
• A generalized hidden Markov model for determining sequence-based predictors of nucleosome positioning
• Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data
• Statistical mechanics of nucleosomes constrained by higher-order chromatin structure
• A continuous-index Bayesian hidden Markov model for prediction of nucleosome positioning in genomic DNA

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