PICS: Probabilistic Inference for ChIP-seq

DOI10.1111/j.1541-0420.2010.01441.xzbMath1216.62184arXiv0903.3206OpenAlexW2150038257WikidataQ51557644 ScholiaQ51557644MaRDI QIDQ3008874

Arnaud Droit, Gordon Robertson, Kaida Ning, Steven Jones, Raphael Gottardo, Xuekui Zhang, Martin Krzywinski

Publication date: 22 June 2011

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0903.3206

zbMATH Keywords

EM algorithmmixture modeltruncated dataBayesian hierarchical modelmissing valuesmappability\(t\)-distributiontranscription factor

Mathematics Subject Classification ID

Related Items (3)

Multiple testing of local maxima for detection of peaks in ChIP-Seq data ⋮ Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling ⋮ PICS

Uses Software

• R
• Bioconductor

Cites Work

• Unnamed Item
• Unnamed Item
• Bayesian regularization for normal mixture estimation and model-based clustering
• Estimating the dimension of a model
• Fitting Mixture Models to Grouped and Truncated Data via the EM Algorithm
• A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments
• How Many Clusters? Which Clustering Method? Answers Via Model-Based Cluster Analysis
• Practical Bayesian Density Estimation Using Mixtures of Normals

This page was built for publication: PICS: Probabilistic Inference for ChIP-seq