Cited in
(only showing first 100 items - show all)- Global and local sequence alignment with a bounded number of gaps
- Error correction in methylation profiling from NGS bisulfite protocols
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- String-matching and alignment algorithms for finding motifs in NGS data
- An efficient approach to merging paired-end reads and incorporation of uncertainties
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis
- Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
- Long Reads Enable Accurate Estimates of Complexity of Metagenomes
- Modeling association in microbial communities with clique loglinear models
- Graph algorithms for DNA sequencing -- origins, current models and the future
- BiocManager
- RankAggreg
- Soap
- AUGUSTUS
- GapsMis
- GATK
- SOAP3
- CLUSTAL
- BMSS
- Samtools
- FastQC
- FASTX
- EMIRGE
- BSgenome
- SOAPdenovo
- QUAST
- RSeQC
- SHRiMP
- Gviz
- Meta-IDBA
- CUDASW++
- Trimmomatic
- sva
- Cogent
- SeqAn
- TFBSTools
- BFAST
- PatternHunter
- ALFRED
- PuFFIN
- G-MAPSEQ
- G-MSA
- G-DNA
- Musket
- FlyBase
- RazerS
- HIVE-hexagon
- modENCODE
- BS Seeker
- Bismark
- BSMAP
- FLASH
- libgapmis
- gage
- HISAT
- ChromHMM
- Tabix
- QuasR
- GenomicRanges
- Knuth Morris Pratt
- Starcode
- mrsFAST
- systemPipeR
- deBGA
- vg
- MultiQC
- PALMapper
- Salmon
- AutoCorres
- dbwt
- DYNAMIC
- get-git-revisions
- Delly
- DGW
- LZ77
- GATB
- LUMPY
- iTOL
- MetaSV
- MONKEY
- Pindel
- RapMap
- svclassify
- ThIEF
- Vaquita
- Yanagi
- BatMeth
- BWA
- CAP-miRSeq
- CUSHAW
- GASV
- GASSST
- PBSIM
- MAP-RSeq
- Commet
- Compareads
- Pash
- PANDAseq
- PEAR
- PSAR-Align
This page was built for software: Bowtie 2
