swMATH29190MaRDI QIDQ40904FDOQ40904
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Official website: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Source code repository: https://github.com/BenLangmead/bowtie2
Cited In (only showing first 100 items - show all)
- Global and local sequence alignment with a bounded number of gaps
- Error correction in methylation profiling from NGS bisulfite protocols
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- String-matching and alignment algorithms for finding motifs in NGS data
- An efficient approach to merging paired-end reads and incorporation of uncertainties
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis
- SPUMONI
- MONI
- Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
- BrownieAligner
- Long Reads Enable Accurate Estimates of Complexity of Metagenomes
- panX
- Sigma
- Modeling association in microbial communities with clique loglinear models
- Mason
- MALT
- Graph algorithms for DNA sequencing -- origins, current models and the future
- Refining the \(r\)-index
- Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes
- Fast and optimal sequence-to-graph alignment guided by seeds
- ProClust
- GeneRAGE
- IMP2_Binary_Heap
- BiSeq
- compGenomRData
- deFuse
- genomation
- gmapR
- GISTIC2.0
- MAnorm
- MethylSeekR
- normr
- ODIN
- Rbowtie
- rGADEM
- rGREAT
- Trim Galore
- SPARSE
- Taxator-tk
- AStarix
- Asgan
- hybridSPAdes
- Vargas
- intePareto
- A resource-frugal probabilistic dictionary and applications in bioinformatics
- FM-index of alignment with gaps
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- A novel specialized single-linkage clustering algorithm for taxonomically ordered data
- ART
- \textsc{AStarix}: fast and optimal sequence-to-graph alignment
- Vaquita: fast and accurate identification of structural variation using combined evidence
- ThIEF: finding genome-wide trajectories of epigenetics marks
- BiocManager
- RankAggreg
- Soap
- AUGUSTUS
- GapsMis
- GATK
- SOAP3
- CLUSTAL
- BMSS
- Samtools
- FastQC
- FASTX
- EMIRGE
- BSgenome
- SOAPdenovo
- QUAST
- RSeQC
- SHRiMP
- Gviz
- Meta-IDBA
- CUDASW++
- Trimmomatic
- sva
- Cogent
- SeqAn
- TFBSTools
- BFAST
- PatternHunter
- ALFRED
- PuFFIN
- G-MAPSEQ
- G-MSA
- G-DNA
- Musket
- FlyBase
- RazerS
- HIVE-hexagon
- modENCODE
- BS Seeker
- Bismark
- BSMAP
- FLASH
- libgapmis
- gage
- HISAT
- ChromHMM
- Tabix
- QuasR
This page was built for software: Bowtie 2
