Cited in
(99)- MULKSG: \textit{MUL}tiple \textit{K} \textit{S}imultaneous \textit{G}raph assembly
- OMGS: optical map-based genome scaffolding
- Safe and complete contig assembly via omnitigs
- Next generation sequencing under de novo genome assembly
- Graph algorithms for DNA sequencing -- origins, current models and the future
- RNA bioinformatics
- ALLPATHS
- ARACHNE
- onechannelgui
- GRASS
- SCARPA
- SOPRA
- SCOOP
- GAGE
- CompaRNA
- Assemble
- CentroidAlign
- CENTROIDFOLD
- IDBA-Tran
- ASPIC
- ARB
- IDBA-UD
- COFOLD
- AstexViewer
- ASPicDB
- DAFS
- ASTALAVISTA
- DARNED
- Oases
- Exogean
- EMIRGE
- ExpEdit
- IPknot
- jViz.Rna
- RNAmute
- ABySS
- QUAST
- Minimus
- PicXAA-R
- PETfold
- PETcofold
- NGS-Trex
- PPfold
- RactIP
- PIntron
- RNAexinv
- RNAfbinv
- RNAalifold
- R-Coffee
- PARalyzer
- R-CHIE
- PatSearch
- R4RNA
- OligoWalk
- R2R
- RNAG
- OptiRNAi
- RNAspa
- RNASTAR
- RILogo
- RNA2D3D
- PolyA_DB
- RNAplex
- REDItools
- RSeQC
- PredGPI
- SeqMap
- RIPSeeker
- SHRiMP
- Meta-IDBA
- SSAKE
- SPAdes
- T-IDBA
- Velvet
- CUDASW++
- SortMeRNA
- TagCleaner
- SPEPlip
- WAR
- BFAST
- G-DNA
- BESST
- MEGAHIT
- ALLMAPS
- Bambus 2
- DBG2OLC
- MULKSG
- QSRA
- Phusion
- SHARCGS
- OMGS
- Pilon
- CUSHAW
- GASSST
- PE-Assembler
- The exact multiple pattern matching problem solved by a reference tree approach
- IDBA
- The contig assembly problem and its algorithmic solutions
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
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