IDBA

MaRDI QIDQ1351141swMATHFDO

Official website https://i.cs.hku.hk/~alse/hkubrg/projects/idba/

Source code repository https://github.com/loneknightpy/idba

Cited in

(28)

• A tale of optimizing the space taken by de Bruijn graphs
• Bidirectional Variable-Order de Bruijn Graphs
• Superstring graph: a new approach for genome assembly
• IDBA-Tran
• IDBA-UD
• SOAPdenovo
• ABySS
• Meta-IDBA
• RepeatMasker
• SSAKE
• SPAdes
• T-IDBA
• Velvet
• MEGAHIT
• DARRC
• QSRA
• SHARCGS
• REPuter
• deBGA
• LoRDEC
• MindTheGap
• PE-Assembler
• The complexity of approximate pattern matching on de Bruijn graphs
• BlastGraph
• Counter based suffix tree for DNA pattern repeats
• The contig assembly problem and its algorithmic solutions
• BrownieAligner
• Linking indexing data structures to de Bruijn graphs: construction and update

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