IDBA

MaRDI QIDQ1351141swMATHFDO

Official website https://i.cs.hku.hk/~alse/hkubrg/projects/idba/

Source code repository https://github.com/loneknightpy/idba

Cited in

(28)

• BlastGraph
• A tale of optimizing the space taken by de Bruijn graphs
• The complexity of approximate pattern matching on de Bruijn graphs
• Counter based suffix tree for DNA pattern repeats
• Linking indexing data structures to de Bruijn graphs: construction and update
• Superstring graph: a new approach for genome assembly
• SSAKE
• SPAdes
• T-IDBA
• IDBA-Tran
• Velvet
• SOAPdenovo
• IDBA-UD
• RepeatMasker
• Meta-IDBA
• ABySS
• The contig assembly problem and its algorithmic solutions
• MEGAHIT
• QSRA
• SHARCGS
• DARRC
• REPuter
• deBGA
• MindTheGap
• LoRDEC
• PE-Assembler
• Bidirectional Variable-Order de Bruijn Graphs
• BrownieAligner

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