ABySS
From MaRDI portal
Cited in
(68)- IDBA
- Canu
- FastLSA
- ALLPATHS
- ARACHNE
- CAP3
- A tale of optimizing the space taken by de Bruijn graphs
- Estimating sequence similarity from read sets for clustering next-generation sequencing data
- JIGSAW
- MULKSG: \textit{MUL}tiple \textit{K} \textit{S}imultaneous \textit{G}raph assembly
- An external-memory algorithm for string graph construction
- OMGS: optical map-based genome scaffolding
- SOPRA
- SCARPA
- GRASS
- GAGE
- Evigan
- SSAKE
- SEQuel
- SPAdes
- Velvet
- SOAPdenovo
- IDBA-UD
- QUAST
- SHRiMP
- PipMaker
- RepeatMasker
- GeneSplicer
- SLAM
- ECgene
- GRAIL
- MAKER-P
- MAKER
- PHRAP
- GBrowse
- Apollo
- MetaVelvet
- MetaGeneAnnotator
- CEGMA
- Meta-IDBA
- Artemis
- RePS
- Bioinformatics for high throughput sequencing
- BFAST
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- The contig assembly problem and its algorithmic solutions
- BEETL
- MEGAHIT
- QSRA
- SHARCGS
- MULKSG
- Phusion
- OMGS
- Bambus 2
- ALLMAPS
- Pilon
- DBG2OLC
- DARRC
- OMBlast
- PBSIM
- Maligner
- GASSST
- PE-Assembler
- Disentangled long-read de Bruijn graphs via optical maps
- scientific article; zbMATH DE number 6403120 (Why is no real title available?)
- On bubble generators in directed graphs
- Comparative gene finding. Models, algorithms and implementation
- ART
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