Bioinformatics for high throughput sequencing

DOI10.1007/978-1-4614-0782-9MaRDI QIDQ3191914zbMATH OpenOpenAlexWikidataFDO

Authors

Publication date 25 September 2014

Full work available at URL https://doi.org/10.1007/978-1-4614-0782-9

zbMATH Keywords

sequencing data

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Handbook of statistical bioinformatics.
• RNA bioinformatics
• Genome-Scale Algorithm Design
• Proceedings of the 5th Asia-Pacific bioinformatics conference, Hong Kong, January 15--17, 2007
• Algorithms for next-generation sequencing data. Techniques, approaches, and applications

Cites work

• ARACHNE
• Velvet

Cited in

(3)

• Proceedings of the 5th Asia-Pacific bioinformatics conference, Hong Kong, January 15--17, 2007
• High performance cDNA sequence analysis using grid technology
• Optimization of hadoop cluster for analyzing large-scale sequence data in bioinformatics

Describes a project that uses

Uses Software

• SpliceTrap
• DWE
• CLIPZ
• mirTools
• miRExpress
• TargetSpy
• miRNAkey
• PatMaN
• SeqBuster
• ProMiR II
• MiRonTop
• MiPred
• miRanalyzer
• DIANA-mirExTra
• MiRFinder
• HPeak
• FindPeaks
• mrsFAST
• SHARCGS
• QSRA
• BING
• BayesCall
• SNVMix
• HMMSplicer
• VarScan
• BSMAP
• BS Seeker
• starBase
• BayesPeak
• ABySS
• ROAST
• SHRiMP
• Velvet
• eggNOG
• BLAT
• miRBase
• KEGG
• FatiGO
• DEGseq
• ARACHNE
• edgeR
• ALLPATHS
• Rfam

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