Bioinformatics for high throughput sequencing

DOI10.1007/978-1-4614-0782-9MaRDI QIDQ3191914zbMATH OpenOpenAlexWikidataFDO

Authors

Publication date 25 September 2014

Full work available at URL https://doi.org/10.1007/978-1-4614-0782-9

zbMATH Keywords

sequencing data

Mathematics Subject Classification ID

Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Handbook of statistical bioinformatics.
• RNA bioinformatics
• Genome-Scale Algorithm Design
• Proceedings of the 5th Asia-Pacific bioinformatics conference, Hong Kong, January 15--17, 2007
• Algorithms for next-generation sequencing data. Techniques, approaches, and applications

Cites work

• ARACHNE
• Velvet

Cited in

(3)

• Optimization of hadoop cluster for analyzing large-scale sequence data in bioinformatics
• Proceedings of the 5th Asia-Pacific bioinformatics conference, Hong Kong, January 15--17, 2007
• High performance cDNA sequence analysis using grid technology

Describes a project that uses

Uses Software

• Velvet
• SHRiMP
• ALLPATHS
• edgeR
• ARACHNE
• DEGseq
• FatiGO
• KEGG
• miRBase
• BLAT
• eggNOG
• SpliceTrap
• Rfam
• ROAST
• ABySS
• BayesPeak
• starBase
• BS Seeker
• BSMAP
• VarScan
• HMMSplicer
• SNVMix
• BayesCall
• BING
• QSRA
• SHARCGS
• mrsFAST
• FindPeaks
• HPeak
• MiRFinder
• DIANA-mirExTra
• miRanalyzer
• MiPred
• MiRonTop
• ProMiR II
• SeqBuster
• PatMaN
• miRNAkey
• TargetSpy
• miRExpress
• mirTools
• CLIPZ
• DWE

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