SHRiMP
From MaRDI portal
Cited in
(47)- Metagenomic reads binning with spaced seeds
- ALLPATHS
- Soap
- RNA bioinformatics
- Compressed spaced suffix arrays
- BLAT
- Velvet
- SOAPdenovo
- SeqMap
- SSAHA
- Meta-IDBA
- ABySS
- Designing efficient spaced seeds for SOLiD read mapping
- Bioinformatics for high throughput sequencing
- BFAST
- PatternHunter
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
- RazerS
- YASS
- HIVE-hexagon
- MetaProb
- SpEED
- CLARK
- MetaSim
- BS Seeker
- BSMAP
- ONE
- Design and analysis of periodic multiple seeds
- Better spaced seeds using quadratic residues
- PatMaN
- ZOOM
- CUSHAW
- GASSST
- Socrates
- MAP-RSeq
- Pash
- CAP-miRSeq
- PSAR-Align
- BatMeth
- BWA
- MetaCluster
- PASS
- MPSCAN
- PerM
- Iedera
- Fast spaced seed hashing
This page was built for software: SHRiMP
