Next generation sequencing under de novo genome assembly

DOI10.1142/S1793524515300018zbMath1335.92029MaRDI QIDQ3449133

M.D. Sarwar Kamal, Sonia Farhana Nimmy

Publication date: 3 November 2015

Published in: International Journal of Biomathematics (Search for Journal in Brave)

zbMATH Keywords

next generation sequencing (NGS)de Bruijn graph (dBG)overlap layout consensusshort read sequence (SRS)SOAP denovo2

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Uses Software

• ARACHNE
• SSAKE
• T-IDBA
• IDBA-Tran
• Velvet
• Oases
• SOAPdenovo
• IDBA-UD

Cites Work

• An Eulerian path approach to DNA fragment assembly