Vaquita: fast and accurate identification of structural variation using combined evidence

DOI10.4230/LIPICS.WABI.2017.13MaRDI QIDQ5111809zbMATH OpenFDO

Authors Jongkyu Kim, Knut Reinert

Publication date 27 May 2020

Full work available at URL https://doi.org/10.4230/LIPICS.WABI.2017.13

zbMATH Keywords

next generation sequencingrank aggregationstructural variationvoting based metric

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to biology (92-04) Protein sequences, DNA sequences (92D20)

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Cites work

• A fast bit-vector algorithm for approximate string matching based on dynamic programming
• Comparing Partial Rankings
• scientific article; zbMATH DE number 44579 (Why is no real title available?)

Cited in

(2)

• Indels detection algorithm based on optimal split-read matching
• Vaquita

Describes a project that uses

Uses Software

• BLAT
• Bowtie 2
• LUMPY
• MetaSV
• svclassify
• Delly
• Pindel
• SeqAn
• GASV
• GitHub

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