swMATH17146MaRDI QIDQ29007FDOQ29007
Author name not available (Why is that?)
Official website: http://compbio.cs.toronto.edu/shrimp/
Cited In (47)
- Design and analysis of periodic multiple seeds
- Better spaced seeds using quadratic residues
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- RNA bioinformatics
- Designing efficient spaced seeds for SOLiD read mapping
- Bioinformatics for high throughput sequencing
- ALLPATHS
- Fast spaced seed hashing
- Soap
- BLAT
- SOAPdenovo
- ABySS
- SeqMap
- Meta-IDBA
- Velvet
- SSAHA
- BFAST
- PatternHunter
- RazerS
- HIVE-hexagon
- CLARK
- BS Seeker
- BSMAP
- MetaProb
- MetaSim
- YASS
- SpEED
- PASS
- ONE
- PatMaN
- ZOOM
- BatMeth
- BWA
- CAP-miRSeq
- CUSHAW
- GASSST
- MAP-RSeq
- Pash
- PSAR-Align
- Socrates
- MetaCluster
- Iedera
- MPSCAN
- PerM
- Compressed spaced suffix arrays
- Metagenomic reads binning with spaced seeds
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
This page was built for software: SHRiMP
