Designing Efficient Spaced Seeds for SOLiD Read Mapping

DOI10.1155/2010/708501zbMath1219.92025OpenAlexW2058264049WikidataQ21296845 ScholiaQ21296845MaRDI QIDQ3002743

Laurent Noé, Marta Gîrdea, Gregory Kucherov

Publication date: 24 May 2011

Published in: Advances in Bioinformatics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1155/2010/708501

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Uses Software

• Soap
• SHRiMP
• BFAST
• PatternHunter
• RazerS
• YASS
• PatMaN
• ZOOM
• BWA
• PASS
• MPSCAN
• PerM
• Iedera

Cites Work

• On spaced seeds for similarity search
• Subset Seed Automaton
• Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions
• Unnamed Item

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