PatternHunter

swMATH20963MaRDI QIDQ32776FDOQ32776

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Cited In (29)

• Sensitivity analysis and efficient method for identifying optimal spaced seeds
• Design and analysis of periodic multiple seeds
• Better spaced seeds using quadratic residues
• Minimal auxiliary Markov chains through sequential elimination of states
• Faster exact distributions of pattern statistics through sequential elimination of states
• Algorithms in Computational Molecular Biology
• Hardness of optimal spaced seed design
• Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design
• Fast Spaced Seed Hashing
• Data mining in bioinformatics
• Distributions of pattern statistics in sparse Markov models
• CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment
• Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds
• Graph connectivity, partial words, and a theorem of Fine and Wilf
• On spaced seeds for similarity search
• Comparative Assessment of Alignment Algorithms for NGS Data: Features, Considerations, Implementations, and Future
• Masking patterns in sequences: A new class of motif discovery with don't cares
• An efficient similarity search based on indexing in large DNA databases
• On the complexity of the spaced seeds
• Optimal spaced seeds for faster approximate string matching
• Combinatorics on partial word correlations
• GAME: A simple and efficient whole genome alignment method using maximal exact match filtering
• Compressed spaced suffix arrays
• Indexing factors with gaps
• An Experimental Study of Compressed Indexing and Local Alignments of DNA
• Designing Efficient Spaced Seeds for SOLiD Read Mapping
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Lossless filter for multiple repetitions with Hamming distance
• Metagenomic reads binning with spaced seeds

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