An efficient similarity search based on indexing in large DNA databases

DOI10.1016/J.COMPBIOLCHEM.2010.03.007zbMath1366.92093OpenAlexW1993189125WikidataQ48065101 ScholiaQ48065101MaRDI QIDQ2362456

Kyoung-Wook Park, Hyeong-Seok Lim, In-Seon Jeong, Seung-Ho Kang

Publication date: 10 July 2017

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2010.03.007

zbMATH Keywords

indexingapproximate string matchingDNA sequencesimilarity search

Mathematics Subject Classification ID

Database theory (68P15) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Uses Software

• PSI-BLAST
• BLAST
• PatternHunter

Cites Work

• A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
• Algorithms on Strings, Trees and Sequences

This page was built for publication: An efficient similarity search based on indexing in large DNA databases