Cited in
(only showing first 100 items - show all)- STRIKE
- TCS
- PAL2NAL
- OrthoMCL
- G-BLASTN
- STRIDE
- geno2pheno
- MADMX
- MARNA
- STRAL
- HMMGEP
- ddbRNA
- Algorithm 489
- FlexProt
- DBA
- An adaptive and iterative algorithm for refining multiple sequence alignment
- Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem
- Analyzing functional similarity of protein sequences with discrete wavelet transform
- An overview of multiple sequence alignments and cloud computing in bioinformatics
- A global averaging method for dynamic time warping, with applications to clustering
- ADLD: a novel graphical representation of protein sequences and its application
- Adaptation of the method of musical composition for solving the multiple sequence alignment problem
- Summarizing a set of time series by averaging: from Steiner sequence to compact multiple alignment
- The EM algorithm and the rise of computational biology
- A Model of N-Terminal Cyclin T1 Based on FRET Experiments
- \textsc{Rime}: repeat identification
- A time warping approach to multiple sequence alignment
- Algorithms in computational molecular biology. Techniques approaches and applications.
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Compositional properties of alignments
- A branch-and-cut algorithm for multiple sequence alignment
- Matrices inducing generalized metric on sequences
- Computational methods in noncoding RNA research
- MSAID: multiple sequence alignment based on a measure of information discrepancy
- Use of image texture analysis to find DNA sequence similarities
- Extended pairwise local alignment of wild card DNA/RNA sequences using dynamic programming
- Phylogenetic footprinting and consistent sets of local aligments
- Global alignment of molecular sequences via ancestral state reconstruction
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- Data mining in bioinformatics
- \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae)
- DCA based algorithms for multiple sequence alignment (MSA)
- Multiobjective artificial fish swarm algorithm for multiple sequence alignment
- Integer Linear Programming in Computational Biology
- Cross-species network and transcript transfer
- A Lagrangian relaxation approach for the multiple sequence alignment problem
- Rfam
- BioJava
- MEGA4
- PHYLIP
- PAUP*
- MAFFT
- Balibase
- PhyloGibbs
- FASTA
- bioperl
- EMBOSS
- PAML
- 3DCoffee
- Biodoop
- BlueSNP
- GapsMis
- ClustalW
- CloudAligner
- DIALIGN
- Eoulsan
- FX
- Hadoop-BAM
- MSAProbs
- ProbCons
- SeqWare
- Seal
- Cofolga
- CLUSTAL
- DIALIGN-TX
- MUMMALS
- Kalign
- LAGAN
- QSCORE
- LTR_FINDER
- MUSCLE
- Repseek
- MTRAP
- Wisconsin
- Varun
- Biostrings
- snoSeeker
- FASTA3
- MEME
- Clustal X
- tracker2
- MEGA6
- Bali-phy
- ESyPred3D
- FUGUE
- HHblits
- PROMALS3D
- SABmark
- FIMO
- MUMMER
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