Cited in
(only showing first 100 items - show all)- Identifying anticancer peptides by using a generalized chaos game representation
- Integer linear programming as a tool for constructing trees from quartet data
- New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
- Phylogenetic inferences from molecular sequences: Review and critique
- String-matching and alignment algorithms for finding motifs in NGS data
- An Ant-Based Model for Multiple Sequence Alignment
- Polynomial-time approximation algorithms for weighted LCS problem
- Distributed and sequential algorithms for bioinformatics
- Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins
- Parallel algorithms to align multiple strings in the context of web data extraction
- Polynomial-time approximation algorithms for weighted LCS problem
- DNA combinatorial messages and epigenomics: the case of chromatin organization and nucleosome occupancy in eukaryotic genomes
- A Dawson-like clustering of human mitochondrial DNA sequences based on protein coding region
- GeneGrid: Architecture, implementation and application
- TreeSOM: cluster analysis in the self-organizing map
- Error detection and correction of gene trees
- ProSTRIP: a method to find similar structural repeats in three-dimensional protein structures
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- Parametric analysis of alignment and phylogenetic uncertainty
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- Data mining in bioinformatics
- Bouma2 -- a high-performance input-aware multiple string-match algorithm
- Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
- Weighted LCS
- Long range clustering of oligonucleotides containing the CG signal
- Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution
- Property matching and weighted matching
- Spectral distortion measures for biological sequence comparisons and database searching
- Statistical analysis and exposure status classification of transmembrane beta barrel residues
- Why does \(\beta \)-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies
- A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants
- Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
- MoDEL: an efficient strategy for ungapped local multiple alignment
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees
- Edward L. Kaplan and the Kaplan-Meier survival curve
- Simulation of conformational changes occurring when a protein interacts with its receptor
- Towards a comprehensive collection of diagnostic patterns for protein sequence classification
- Novel evolutionary models and applications to sequence alignment problems
- Bilateral similarity function: a novel and universal method for similarity analysis of biological sequences
- An efficient algorithm for deciphering regulatory motifs
- Bioinformatics and the Cell
- DCA based algorithms for multiple sequence alignment (MSA)
- Multiobjective artificial fish swarm algorithm for multiple sequence alignment
- In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
- Detecting conserved secondary structures in RNA molecules using constrained structural alignment
- Fast embedding methods for clustering tens of thousands of sequences
- Cross-species network and transcript transfer
- Two applications of the divide \(\&\) conquer principle in the molecular sciences
- Finding transcription factor binding motifs for coregulated genes by combining sequence overrepresentation with cross-species conservation
- Some string matching problems from bioinformatics which still need better solutions
- A non-local gap-penalty for profile alignment
- A Lagrangian relaxation approach for the multiple sequence alignment problem
- Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
- RNA bioinformatics
- Computational Genome Analysis
- A large neighborhood search heuristic for the longest common subsequence problem
- Involvement of some large immunophilins and their ligands in the protection and regeneration of neurons: A hypothetical mode of action
- jETI
- iB4e
- eXist
- BioGRID
- FastLSA
- GeneGrid
- ViDE
- TreeSOM
- HAPLO
- Rfam
- ROADRUNNER
- fastDNAml
- Biopython
- MrBayes
- PHYLIP
- RAxML
- PAUP*
- Macrodox
- MAFFT
- Balibase
- CAP3
- Cytoscape
- MEGA
- BioProspector
- Taverna
- FASTA
- mpiBLAST
- bioperl
- HMMER
- EMBOSS
- JIGSAW
- PAML
- 3DCoffee
- TMBpro
- Biodoop
- BlueSNP
- CloudBLAST
- CloudBurst
- CloudAligner
- DIALIGN
- Expresso
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