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swMATH12016MaRDI QIDQ23950FDOQ23950

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Cited In (only showing first 100 items - show all)

• Phylogenetic inferences from molecular sequences: Review and critique
• Algorithms in Computational Molecular Biology
• Distributed and sequential algorithms for bioinformatics
• Polynomial-time approximation algorithms for weighted LCS problem
• GeneGrid: Architecture, implementation and application
• TreeSOM: cluster analysis in the self-organizing map
• Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
• ProSTRIP: a method to find similar structural repeats in three-dimensional protein structures
• Parametric analysis of alignment and phylogenetic uncertainty
• Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
• Weighted LCS
• Data mining in bioinformatics
• Title not available (Why is that?)
• Long range clustering of oligonucleotides containing the CG signal
• Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution
• Property matching and weighted matching
• Spectral distortion measures for biological sequence comparisons and database searching
• Statistical analysis and exposure status classification of transmembrane beta barrel residues
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
• Simulation of conformational changes occurring when a protein interacts with its receptor
• Towards a comprehensive collection of diagnostic patterns for protein sequence classification
• Bilateral similarity function: a novel and universal method for similarity analysis of biological sequences
• Novel evolutionary models and applications to sequence alignment problems
• Bioinformatics and the Cell
• DCA based algorithms for multiple sequence alignment (MSA)
• In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Fast embedding methods for clustering tens of thousands of sequences
• Two applications of the divide \(\&\) conquer principle in the molecular sciences
• Finding transcription factor binding motifs for coregulated genes by combining sequence overrepresentation with cross-species conservation
• Some string matching problems from bioinformatics which still need better solutions
• Computational Genome Analysis
• A Lagrangian relaxation approach for the multiple sequence alignment problem
• A large neighborhood search heuristic for the longest common subsequence problem
• Involvement of some large immunophilins and their ligands in the protection and regeneration of neurons: A hypothetical mode of action
• Constrained pairwise and center-star sequences alignment problems
• Analyzing functional similarity of protein sequences with discrete wavelet transform
• A novel algorithm for macromolecular epitope matching
• An overview of multiple sequence alignments and cloud computing in bioinformatics
• Title not available (Why is that?)
• Computing the longest topological common subsequence of a symbol-wise totally ordered directed acyclic graph and a sequence
• In silico docking reveals possible riluzole binding sites on Nav1.6 sodium channel: implications for amyotrophic lateral sclerosis therapy
• ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks
• Adaptation of the method of musical composition for solving the multiple sequence alignment problem
• Fine tuned exploration of evolutionary relationships within the protein universe
• The EM algorithm and the rise of computational biology
• A comparative computational analysis of protein sequences and literature mining classify `orphan' neurotransmitter transporters
• Polynomial-Time Approximation Algorithms for Weighted LCS Problem
• Discrete wavelet packet transform based discriminant analysis for whole genome sequences
• \textsc{Rime}: repeat identification
• Slicing and dicing the genome: A statistical physics approach to population genetics
• Probabilistic ancestral sequences and multiple alignments
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• A note on clustering the functionally-related paralogues and orthologues of proteins: a case of the FK506-binding proteins (FKBPs)
• Pattern-constrained multiple polypeptide sequence alignment
• Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment
• Multiple sequence alignment using the hidden Markov model trained by an improved quantum-behaved particle swarm optimization
• MSAID: multiple sequence alignment based on a measure of information discrepancy
• Probing the protein space for extending the detection of weak homology folds
• Identifying anticancer peptides by using a generalized chaos game representation
• Integer linear programming as a tool for constructing trees from quartet data
• New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
• An Ant-Based Model for Multiple Sequence Alignment
• Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins
• DNA combinatorial messages and epigenomics: the case of chromatin organization and nucleosome occupancy in eukaryotic genomes
• A Dawson-like clustering of human mitochondrial DNA sequences based on protein coding region
• Sequence graph transform (SGT): a feature embedding function for sequence data mining
• Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
• Why does \(\beta \)-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies
• A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants
• MoDEL: an efficient strategy for ungapped local multiple alignment
• Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees
• IDPM: An Improved Degenerate Pattern Matching Algorithm for Biological Sequences
• String-Matching and Alignment Algorithms for Finding Motifs in NGS Data
• Multiobjective artificial fish swarm algorithm for multiple sequence alignment
• Cross-species network and transcript transfer
• A non-local gap-penalty for profile alignment
• Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
• RNA bioinformatics
• An adaptive and iterative algorithm for refining multiple sequence alignment
• ConPred\_elite: a highly reliable approach to transmembrane topology prediction
• Local multiple alignment via subgraph enumeration
• Alignment using genetic programming with causal trees for identification of protein functions
• Parallel Algorithms to Align Multiple Strings in the Context of Web Data Extraction
• A time series representation of protein sequences for similarity comparison
• Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences
• Homology modeling of membrane proteins: a critical assessment
• The eukaryotic Pso2p/Snm1p family revisited: in silico analyses of Pso2p A, B and plasmodium groups
• Error Detection and Correction of Gene Trees
• A time warping approach to multiple sequence alignment
• Edward L. Kaplan and the Kaplan-Meier Survival Curve
• Bouma2 – A High-Performance Input-Aware Multiple String-Match Algorithm
• Comparative gene finding. Models, algorithms and implementation
• Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
• SIMILARITIES/DISSIMILARITIES ANALYSIS OF PROTEIN SEQUENCES BASED ON PCA-FFT
• The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
• Comparisons of d\(N\)/d\(S\) are time dependent for closely related bacterial genomes
• A hybrid method for protein sequence modeling with improved accuracy
• Competitive evolution of H1N1 and H3N2 influenza viruses in the United States: a mathematical modeling study

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