Finding transcription factor binding motifs for coregulated genes by combining sequence overrepresentation with cross-species conservation
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Cites work
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(9)- A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
- Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
- Distance conservation of transcription regulatory motifs in human promoters
- Sampling motifs on phylogenetic trees
- Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast
- Evaluation of phylogenetic footprinting and its application for improved prediction of transcription factor binding sites
- Decoding transcriptional regulatory interactions
- Prediction of motifs based on a repeated-measures model for integrating cross-species sequence and expression data
- Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding
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