ConPred\_elite: a highly reliable approach to transmembrane topology prediction

DOI10.1016/J.COMPBIOLCHEM.2003.11.002MaRDI QIDQ2490611zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Jun-Xiong Xia, Masami Ikeda, Toshio Shimizu

Publication date 16 May 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2003.11.002

zbMATH Keywords

Consensus approachHigh reliabilityProteome-wide analysisTransmembrane proteinTransmembrane topology prediction

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Cell biology (92C37) Biochemistry, molecular biology (92C40)

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Cited in

(2)

• A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins
• A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction

Describes a project that uses

Uses Software

• ClustalW
• PHAT
• SOSUI
• HMMTOP

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