A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction

DOI10.1016/j.compbiolchem.2004.07.002zbMath1089.92007WikidataQ51984087 ScholiaQ51984087MaRDI QIDQ2490540

W. Jim Zheng, Velin Z. Spassov, Lisa Yan, Paul K. Flook, Sándor Szalma

Publication date: 16 May 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2004.07.002

zbMATH Keywords

Hidden Markov model; Folding energy; GPCR; Topology prediction; Transmembrane protein topology

Mathematics Subject Classification ID

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92C40: Biochemistry, molecular biology

92C37: Cell biology

Uses Software

• CHARMM

Cites Work

• ConPred\_elite: a highly reliable approach to transmembrane topology prediction