Statistical analysis and exposure status classification of transmembrane beta barrel residues

DOI10.1016/J.COMPBIOLCHEM.2011.03.002MaRDI QIDQ1629375zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Sikander Hayat, Yungki Park, Volkhard Helms

Publication date 11 December 2018

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2011.03.002

zbMATH Keywords

exposure statuspropensity scalestransmembrane beta barrel proteins

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• The elements of statistical learning. Data mining, inference, and prediction
• The union of balls and its dual shape
• \(\beta\)-barrel transmembrane proteins: geometric modelling, detection of transmembrane region, and structural properties

Cited in

(5)

• Improving Prediction of Hydrophobic Segments along a Transmembrane Protein Sequence using Adaptive Multiscale Lifting
• Residue centrality in alpha helical polytopic transmembrane protein structures
• \(\beta\)-barrel transmembrane proteins: geometric modelling, detection of transmembrane region, and structural properties
• ConPred\_elite: a highly reliable approach to transmembrane topology prediction
• A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins

Describes a project that uses

Uses Software

• AL2CO
• MPRAP
• AAindex
• ClustalW
• TMBpro
• R

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