Sequence graph transform (SGT): a feature embedding function for sequence data mining

DOI10.1007/s10618-021-00813-0zbMath1494.68228arXiv1608.03533OpenAlexW4206725450MaRDI QIDQ2134047

Chitta Ranjan, Kamran Paynabar, Samaneh Ebrahimi

Publication date: 5 May 2022

Published in: Data Mining and Knowledge Discovery (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1608.03533

zbMATH Keywords

classificationclusteringfeature extractionsearchsequence

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Learning and adaptive systems in artificial intelligence (68T05)

Uses Software

• SPADE
• FASTA
• DIALIGN
• ClustalW
• MUSCLE
• T-coffee
• seqHMM
• HHblits
• PSI-BLAST
• BLAST
• PrefixSpan
• UniProt

Cites Work

• Classification of time series by shapelet transformation
• A time series forest for classification and feature extraction
• Variable length local decoding and alignment-free sequence comparison
• Data mining in bioinformatics
• Comparison of biosequences
• Time series classification with ensembles of elastic distance measures
• The BOSS is concerned with time series classification in the presence of noise
• Using dynamic time warping distances as features for improved time series classification
• FEATURES EXTRACTION FOR PROTEIN HOMOLOGY DETECTION USING HIDDEN MARKOV MODELS COMBINING SCORES
• Frequent Pattern Mining
• Data stream clustering
• Level-crossing ordering of semi-Markov processes and markov chains
• SPADE: An efficient algorithm for mining frequent sequences
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