A time series representation of protein sequences for similarity comparison

DOI10.1016/J.JTBI.2022.111039MaRDI QIDQ2670184zbMATH OpenOpenAlexFDO

Authors Cancan Li, Qi Dai, Pingan He

Publication date 10 March 2022

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2022.111039

zbMATH Keywords

coronavirusesDTW algorithmHungarian algorithmsubstitution matrixtime series

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

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Cites work

• A novel descriptor of protein sequences and its application
• A novel model for protein sequence similarity analysis based on spectral radius

Cited in

(3)

• Similarities/dissimilarities analysis of protein sequences based on PCA-FFT
• Protein Sequence Comparison Method Based on 3-ary Huffman Coding
• A novel feature extraction model for protein sequence comparison

Describes a project that uses

Uses Software

• dtw
• ClustalW

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