Protein Sequence Comparison Method Based on 3-ary Huffman Coding

DOI10.46793/MATCH.90-2.357QMaRDI QIDQ6167647zbMATH OpenFDO

Authors Zhaohui Qi, Yingqiang Ning

Publication date 10 July 2023

Published in Match Communications in Mathematical and in Computer Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.46793/MATCH.90-2.357Q

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
• A 3D graphical representation of protein sequences based on the Gray code
• A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• A Method for the Construction of Minimum-Redundancy Codes
• A new graphical coding of DNA sequence and its similarity calculation
• A novel descriptor of protein sequences and its application
• A time series representation of protein sequences for similarity comparison
• Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word
• An application of the 2D-dynamic representation of DNA/RNA sequences to the prediction of influenza a virus subtypes
• Analysis of similarity/dissimilarity of DNA sequences based on dual nucleotides
• Four-component spectral representation of DNA sequences
• scientific article; zbMATH DE number 2061729 (Why is no real title available?)
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications
• Weighted relative entropy for phylogenetic tree based on 2-step Markov model

Cited in

(1)

• Hepatitis C virus contact map prediction based on binary encoding strategy

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