Fine tuned exploration of evolutionary relationships within the protein universe

DOI10.1515/SAGMB-2019-0039zbMATH Open1472.92164OpenAlexW3130414178MaRDI QIDQ2236693FDOQ2236693

Authors: Danilo Gullotto 

Publication date: 26 October 2021

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2019-0039

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zbMATH Keywords

closed loopprotein networkLUCAco-independent evolutionary sitesintra-domain interactionssequence profile

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Cites Work

• On Information and Sufficiency
• Fast unfolding of communities in large networks
• Collective dynamics of `small-world' networks
• Probing the protein space for extending the detection of weak homology folds

Cited In (4)

• A MODEL OF LARGE-SCALE PROTEOME EVOLUTION
• Protein evolution on partially correlated landscapes.
• Modeling Dependence in Evolutionary Inference for Proteins
• Protein communication system: Evolution and genomic structure

Uses Software

• MEGA
• ClustalW
• Gephi
• PSI-BLAST
• BLAST
• TM-align

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