Structural relatedness via flow networks in protein sequence space

DOI10.1016/J.JTBI.2009.07.004MaRDI QIDQ1625916zbMATH OpenOpenAlexWikidataFDO

Authors Zakharia M. Frenkel, Zeev M. Frenkel, Edward N. Trifonov, Sagi Snir

Publication date 26 November 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2009.07.004

zbMATH Keywords

network analysisprotein structure predictionprotein sequence analysissequence annotation

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 2084315 (Why is no real title available?)
• A new approach to the maximum-flow problem
• Error detecting and error correcting codes
• Introduction to algorithms
• Network flows. Theory, algorithms, and applications.
• On implementing the push-relabel method for the maximum flow problem
• Walking through protein sequence space

Cited in

(1)

• Fine tuned exploration of evolutionary relationships within the protein universe

Describes a project that uses

Uses Software

• Pajek
• Cell-PLoc
• Signal-CF
• Signal-3L
• EzyPred
• MinRMS

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