Cited in
(only showing first 100 items - show all)- Better spaced seeds using quadratic residues
- Probabilistic models for error correction of nonuniform sequencing data
- Partially local multi-way alignments
- Biosequence Time–Frequency Processing: Pathogen Detection and Identification
- SVM classification of human intergenic and gene sequences
- Data mining in bioinformatics
- Data mining techniques for the life sciences
- Statistical genomics. Methods and protocols
- A randomized numerical aligner (rNA)
- Computational identification of novel microRNA homologs in the chimpanzee genome
- Vector seeds: An extension to spaced seeds
- Rfam
- Rnamotif
- ALLPATHS
- oligo
- Biopython
- CGH-Plotter
- ARACHNE
- AnnotationDbi
- RankProd
- CAP3
- Footprinter
- Soap
- HMMER
- AUGUSTUS
- DIALIGN
- TASSEL
- Quake
- CLUSTAL
- SCARPA
- BLAST
- LAGAN
- SLAM
- GAGE
- QNet
- Biostrings
- miRBase
- Samtools
- MENDEL
- VCFtools
- MEME
- HHblits
- HTSeq
- Galaxy
- eggNOG
- AVID
- Mugsy
- BioMart
- Prodigal
- FragGeneScan
- AnnotationHub
- AnnotationForge
- CellMiner
- BEDTools
- BEDOPS
- ABySS
- Cutadapt
- NGS QC Toolkit
- DREME
- ExpTreeDB
- Rnaz
- F-Seq
- GenomicFeatures
- FIMO
- GMAP
- GeneSigDB
- EasyGene
- HHpred
- GEOmetadb
- ECgene
- PCAP
- IGV
- GSVA
- Genoviz
- GeneHug-GEPIS
- GenomeGraphs
- SHRiMP
- GSNAP
- MUMMER
- MEDIPS
- PipMaker
- JBROWSE
- OrganismDbi
- Oncomine
- MAKER
- NGS-QC
- pyDNase
- PROPER
- PHRAP
- PSI-BLAST
- Rtracklayer
- ROAST
- Rsubread
- SSAKE
- SPAdes
- Velvet
- TopHat
- SSAHA
- VarSifter
- VariantTools
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