Cited in
(76)- Efficiently inferring the demographic history of many populations with allele count data
- Empirical Bayes scan statistics for detecting clusters of disease risk variants in genetic studies
- Error correction in methylation profiling from NGS bisulfite protocols
- TreeClone: reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data
- A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data
- Detecting mutations in mixed sample sequencing data using empirical Bayes
- Estimating Latent Cell Subpopulations with Bayesian Feature Allocation Models
- An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data
- Variance in estimated pairwise genetic distance under high versus low coverage sequencing: the contribution of linkage disequilibrium
- An external-memory algorithm for string graph construction
- STAR
- adephylo
- BM-map
- Biodoop
- BlueSNP
- CloudBLAST
- CloudBurst
- CloudAligner
- Expresso
- Eoulsan
- FX
- Hadoop-BAM
- MICAlign
- MrsRF
- PeakRanger
- SeqWare
- Seal
- SOAP3
- Samtools
- FastQC
- FASTX
- ABySS
- Meta-IDBA
- Trimmomatic
- A Bayesian feature allocation model for tumor heterogeneity
- ReadDepth
- Jnomics
- BFAST
- BEETL
- Bismark
- PurBayes
- PurityEst
- PhyloWGS
- PyClone
- THetA
- VarScan
- HISAT
- Bowtie 2
- Swift
- mrsFAST
- SciClone
- PairClone
- BayClone2
- TreeClone
- Salmon
- BWA
- Crossbow
- GASSST
- fastsimcoal
- momi2
- PoMo
- MethylCoder
- vipR
- BCFtools
- ExomeWalker
- HitWalker
- HTQC
- Jannovar
- SNVer
- SomaticSignatures
- An overview of multiple sequence alignments and cloud computing in bioinformatics
- Computational exome and genome analysis
- BioWorkbench
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- CUSHAW suite: parallel and efficient algorithms for NGS read alignment
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