swMATH27471MaRDI QIDQ39187FDOQ39187
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Official website: http://massgenomics.org/varscan
Source code repository: https://github.com/dkoboldt/varscan
Cited In (44)
- Error correction in methylation profiling from NGS bisulfite protocols
- Exome sequencing identifies predisposing and fusion gene in ganglioneuroma, ganglioneuroblastoma and neuroblastoma
- Bioinformatics for high throughput sequencing
- GATK
- miRBase
- Samtools
- FASTX
- RSEM
- Trimmomatic
- ReadDepth
- BS Seeker
- BSMAP
- DNMAD
- FunCoup
- MATHT
- miTarget
- TopHat-Fusion
- mrsFAST
- SNVMix
- eSNV-detect
- HaploReg
- MapSplice
- MultiQC
- ReQON
- SomaticSniper
- Strelka
- topGO
- Wileup
- abSNP
- GlfMultiples
- RNASeqReadSimulator
- Sniper
- MethylCoder
- Computational exome and genome analysis
- BCFtools
- ExomeWalker
- HitWalker
- HTQC
- Jannovar
- SNVer
- SomaticSignatures
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- MATHT: a web server for comprehensive transcriptome data analysis
- abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation
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