swMATH23481MaRDI QIDQ35254FDOQ35254
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Official website: https://github.com/BSSeeker/BSseeker2
Source code repository: https://github.com/BSSeeker/BSseeker2
Cited In (62)
- Error correction in methylation profiling from NGS bisulfite protocols
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- On the average-case complexity of pattern matching with wildcards
- Bioinformatics for high throughput sequencing
- FASTX
- SHRiMP
- SolexaQA
- BEAT
- HIVE-hexagon
- BSmooth
- Bismark
- BISMA
- Bisulfighter
- BSMAP
- COHCAP
- DMAP
- HMM-DM
- methylKit
- MethylSig
- MOABS
- PASS-bis
- RRBSMAP
- SAAP-RRBS
- IMA
- starBase
- TileQC
- VarScan
- HMM-Fisher
- BayesCall
- BING
- CLIPZ
- DIANA-mirExTra
- DWE
- FindPeaks
- HMMSplicer
- HPeak
- MiRFinder
- miRanalyzer
- MiPred
- MiRonTop
- miRNAkey
- miRExpress
- mirTools
- mrsFAST
- PatMaN
- ProMiR II
- QSRA
- SHARCGS
- SeqBuster
- methyAnalysis
- SpliceTrap
- TargetSpy
- BatMeth
- CAP-miRSeq
- CUSHAW
- MAP-RSeq
- Pash
- PSAR-Align
- Socrates
- MethylCoder
- HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
- HMM-DM: identifying differentially methylated regions using a hidden Markov model
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