HMM-DM: identifying differentially methylated regions using a hidden Markov model
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Publication:306663
DOI10.1515/SAGMB-2015-0077zbMATH Open1343.92180OpenAlexW2429367725WikidataQ39990161 ScholiaQ39990161MaRDI QIDQ306663FDOQ306663
Authors: Xiaoqing Yu, Shuying Sun 
Publication date: 1 September 2016
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1515/sagmb-2015-0077
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Cites Work
- HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
- methylKit
- Slice sampling. (With discussions and rejoinder)
- Sampling-Based Approaches to Calculating Marginal Densities
- Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
Cited In (14)
- Assessing genome-wide significance for the detection of differentially methylated regions
- MethCP: differentially methylated region detection with change point models
- A hidden Markov model for identifying differentially methylated sites in bisulfite sequencing data
- Redefining CpG islands using hidden Markov models
- A Bayesian hidden Markov model for detecting differentially methylated regions
- Differential methylation tests of regulatory regions
- Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
- A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation
- Incorporating genomic annotation into a hidden Markov model for DNA methylation tiling array data
- HMM-DM
- HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
- Covariate adjusted differential variability analysis of DNA methylation with propensity score method
- Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation
- An empirical Bayes approach for methylation differentiation at the single nucleotide resolution
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