Covariate adjusted differential variability analysis of DNA methylation with propensity score method

DOI10.1515/SAGMB-2013-0072MaRDI QIDQ482813zbMATH OpenOpenAlexWikidataFDO

Authors Pei Fen Kuan

Publication date 6 January 2015

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2013-0072

zbMATH Keywords

generalized linear modelscore testdifferential variable methylationpropensity score stratification

Mathematics Subject Classification ID

Generalized linear models (logistic models) (62J12) General biostatistics (92B15) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 3945130 (Why is no real title available?)
• scientific article; zbMATH DE number 45877 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation
• Propensity score modeling strategies for the causal analysis of observational data
• The central role of the propensity score in observational studies for causal effects

Cited in

(5)

• A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation
• Variance and covariance heterogeneity analysis for detection of metabolites associated with cadmium exposure
• Heterogeneous Mediation Analysis on Epigenomic PTSD and Traumatic Stress in a Predominantly African American Cohort
• Accounting for unobserved covariates with varying degrees of estimability in high-dimensional biological data
• Feature selection using logistic regression in case-control DNA methylation data of Parkinson's disease: a comparative study

Describes a project that uses

Uses Software

• topGO
• IMA
• CpGassoc

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