A Bayesian hidden Markov model for detecting differentially methylated regions
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Publication:5214527
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(17)- Modeling dependence in methylation patterns with application to ovarian carcinomas
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- MethCP: differentially methylated region detection with change point models
- An empirical Bayes approach for methylation differentiation at the single nucleotide resolution
- A hidden Markov model for identifying differentially methylated sites in bisulfite sequencing data
- Efficient detection and classification of epigenomic changes under multiple conditions
- Assessing genome-wide significance for the detection of differentially methylated regions
- Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data
- Identifying intergenerational patterns of correlated methylation sites
- Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation
- Bayesian Hidden Markov Modeling of Array CGH Data
- Bayesian inference supports a location and neighbour-dependent model of DNA methylation propagation at the MGMT gene promoter in lung tumours
- Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
- A smoothed EM-algorithm for DNA methylation profiles from sequencing-based methods in cell lines or for a single cell type
- A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation
- Incorporating genomic annotation into a hidden Markov model for DNA methylation tiling array data
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