An empirical Bayes approach for methylation differentiation at the single nucleotide resolution

MaRDI QIDQ3100285zbMATH OpenFDO

Authors

Publication date 23 November 2011

zbMATH Keywords

DNA methylation

Mathematics Subject Classification ID

Parametric hypothesis testing (62F03) Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50) Biochemistry, molecular biology (92C40) Empirical decision procedures; empirical Bayes procedures (62C12)

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Cited in

(7)

• HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
• HMM-DM: identifying differentially methylated regions using a hidden Markov model
• Accurate genome-scale percentage DNA methylation estimates from microarray data
• Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data
• Error correction in methylation profiling from NGS bisulfite protocols
• A Bayesian hidden Markov model for detecting differentially methylated regions
• Model-based whole-genome analysis of DNA methylation fidelity

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