Redefining CpG islands using hidden Markov models

DOI10.1093/BIOSTATISTICS/KXQ005zbMATH Open1437.62659OpenAlexW2130202009WikidataQ33904249 ScholiaQ33904249MaRDI QIDQ3303563FDOQ3303563

Authors:

Publication date: 4 August 2020

Published in: Biostatistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1093/biostatistics/kxq005

Recommendations

• Identifying \(\mathrm{CpG}\) islands: sliding window and hidden Markov model approaches
• Determining coding CpG islands by identifying regions significant for pattern statistics on Markov chains
• HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
• HMM-DM: identifying differentially methylated regions using a hidden Markov model
• Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Cites Work

• Title not available (Why is that?)
• Stochastic models for heterogeneous DNA sequences
• Title not available (Why is that?)
• Biological Sequence Analysis
• A Bayesian Approach to DNA Sequence Segmentation
• Title not available (Why is that?)

Cited In (2)

• Determining coding CpG islands by identifying regions significant for pattern statistics on Markov chains
• Identifying \(\mathrm{CpG}\) islands: sliding window and hidden Markov model approaches

This page was built for publication: Redefining CpG islands using hidden Markov models

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3303563)