Alignment-free comparison of genome sequences by a new numerical characterization
DOI10.1016/J.JTBI.2011.04.003zbMATH Open1397.92196OpenAlexW2141970055WikidataQ45338526 ScholiaQ45338526MaRDI QIDQ1783550FDOQ1783550
Authors: Guohua Huang, Houqing Zhou, Yong-Fan Li, Lixin Xu 
Publication date: 21 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.04.003
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Cites Work
- Distributional regimes for the number of k -word matches between two random sequences
- Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
- A measure of the similarity of sets of sequences not requiring sequence alignment.
- A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
- A 3D graphical representation of DNA sequences and its application
- New 3D graphical representation of DNA sequence based on dual nucleotides
Cited In (17)
- Efficient Alignment Free Sequence Comparison with Bounded Mismatches
- Alignment-free sequence comparison with spaced k-mers.
- A novel representation of DNA sequence based on CMI coding
- Theoretical Computer Science
- Sequence comparison via polar coordinates representation and curve tree
- Alignment-free sequence comparison for biologically realistic sequences of moderate length
- A new combinatorial approach to sequence comparison
- Comparison of numerical representations of genomic sequences: choosing the best mapping for wavelet analysis
- GAME: A simple and efficient whole genome alignment method using maximal exact match filtering
- Comparison of Symbol Sequences: No Editing, No Alignment
- Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization
- New method for global alignment of 2 DNA sequences by the tree data structure
- Discrete wavelet packet transform based discriminant analysis for whole genome sequences
- New powerful statistics for alignment-free sequence comparison under a pattern transfer model
- Circular helix-like curve: an effective tool of biological sequence analysis and comparison
- Biomolecular topology: modelling and analysis
- Compositional spectrum - revealing patterns for genomic sequence characterization and comparison
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