New powerful statistics for alignment-free sequence comparison under a pattern transfer model
DOI10.1016/J.JTBI.2011.06.020zbMATH Open1397.92459OpenAlexW2155430004WikidataQ35136642 ScholiaQ35136642MaRDI QIDQ1786038FDOQ1786038
Xuemei Liu, Gesine Reinert, Fengzhu Sun, Jing Li, Michael S. Waterman, Lin Wan
Publication date: 24 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc3146591
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Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)
Cites Work
- Distributional regimes for the number of k -word matches between two random sequences
- A measure of the similarity of sets of sequences not requiring sequence alignment.
- A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
- Empirical distribution of \(k\)-word matches in biological sequences
- Approximate word matches between two random sequences
- Characterizing the D2 statistic: word matches in biological sequences
- Asymptotic Behavior of k-Word Matches Between two Uniformly Distributed Sequences
Cited In (6)
- Alignment-free sequence comparison with spaced k-mers.
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Extraction of high quality \(k\)-words for alignment-free sequence comparison
- Alignment-free sequence comparison for biologically realistic sequences of moderate length
- Alignment free comparison: \(k\) word voting model and its applications
- On an alternative sequence comparison statistic of Steele
Uses Software
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