Statistical considerations underpinning an alignment-free sequence comparison method

DOI10.1016/J.JKSS.2010.02.009MaRDI QIDQ2511571zbMATH OpenOpenAlexFDO

Authors Junmei Jing, Conrad J. Burden, Sylvain Fôret, Susan R. Wilson

Publication date 6 August 2014

Published in Journal of the Korean Statistical Society (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jkss.2010.02.009

zbMATH Keywords

sequence comparison\(D_{2}\) distribution\(D_{2}\) statistics\(k\)-word match

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 699389 (Why is no real title available?)
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• An overview of recent developments in genomics and associated statistical methods
• Approximate word matches between two random sequences
• Asymptotic Behavior of k-Word Matches Between two Uniformly Distributed Sequences
• Characterizing the D2 statistic: word matches in biological sequences
• Compound Poisson approximation: A user's guide
• Distributional regimes for the number of k -word matches between two random sequences
• Empirical distribution of \(k\)-word matches in biological sequences
• Poisson approximation for dependent trials
• Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
• Statistical methods in bioinformatics. An introduction.

Cited in

(7)

• Rapid and accurate estimates of statistical significance for sequence data base searches.
• Alignment-free sequence comparison for biologically realistic sequences of moderate length
• Using simple statistics to compare genetic sequences
• Empirical distribution of \(k\)-word matches in biological sequences
• On an alternative sequence comparison statistic of Steele
• New powerful statistics for alignment-free sequence comparison under a pattern transfer model
• A Statistical Method for Comparison of Two Structures and Its Biological Applications

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