Statistical considerations underpinning an alignment-free sequence comparison method

DOI10.1016/j.jkss.2010.02.009zbMath1294.92022OpenAlexW2076678212MaRDI QIDQ2511571

Susan R. Wilson, Sylvain Forêt, Conrad J. Burden, Junmei Jing

Publication date: 6 August 2014

Published in: Journal of the Korean Statistical Society (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jkss.2010.02.009

zbMATH Keywords

sequence comparison\(D_{2}\) distribution\(D_{2}\) statistics\(k\)-word match

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

• Unnamed Item
• Empirical distribution of \(k\)-word matches in biological sequences
• Poisson approximation for dependent trials
• Statistical methods in bioinformatics. An introduction.
• Compound Poisson approximation: A user's guide
• Approximate word matches between two random sequences
• Characterizing the D2 Statistic: Word Matches in Biological Sequences
• Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
• An overview of recent developments in genomics and associated statistical methods
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• Asymptotic Behavior of k-Word Matches Between two Uniformly Distributed Sequences
• Distributional regimes for the number of k -word matches between two random sequences

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