Extraction of high quality k-words for alignment-free sequence comparison
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Publication:2415644
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Cites work
- A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
- A measure of the similarity of sets of sequences not requiring sequence alignment.
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- Algorithms on Strings, Trees and Sequences
- Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word
- Approximate word matches between two random sequences
- Biological Sequence Analysis
- Characterizing the D2 statistic: word matches in biological sequences
- Comparison of phylogenetic trees
- Distributional regimes for the number of k -word matches between two random sequences
- scientific article; zbMATH DE number 3829300 (Why is no real title available?)
- scientific article; zbMATH DE number 699389 (Why is no real title available?)
- New powerful statistics for alignment-free sequence comparison under a pattern transfer model
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
- The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
- WSE, a new sequence distance measure based on word frequencies
Cited in
(10)- A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- Phylogenetic analysis of DNA sequences based on \(k\)-word and rough set theory
- Alignment free comparison: k word voting model and its applications
- Weighted measures based on maximizing deviation for alignment-free sequence comparison
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- Linear regression model of short k-word: a similarity distance suitable for biological sequences with various lengths
- A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
- Weighted \(k\)-word matches: a sequence comparison tool for proteins
- Alignment-free sequence comparison with spaced k-mers.
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